[bulkRNASeq] NF_RCP 2.0.0 - post-processing fails after with user-provided runsheet_path

[bnovak32]

Describe the bug Post-processing workflow fails on run folder created by main workflow that was started with a run sheet rather than an accession number.

To Reproduce Steps to reproduce the behavior:

1. Run NF_RCP 2.0.0 main workflow with --runsheet_path </path/to/runsheet> as in Approach 3 in README.md
2. Run NF_RCP 2.0.0 post processing workflow using -entry POST_PROCESSING

Expected behavior The post-processing workflow should be able to find the runsheet path based on the runsheet_path parameter

Additional context

• Assay: bulkRNASeq
• Workflow: NF_RCP
• Workflow version: 2.0.0

[bnovak32]

Workaround Create a folder named Metadata inside the run folder and copy the runsheet into it. Ensure that the runsheet name matches the pattern *_runsheet.csv