nansne

Could not retrieve index file for .bam

3

Hi, I ran cellsnp-lite, and failed with "[E::idx_find_and_load] Could not retrieve index file for './gex_possorted_bam.bam'", so what should i do next? Thank you very much!

A large number of cells are unassigned & very few n_vars

3

Hi, I ran vireo model 2 with my 10X multiome data (joint ATAC+RNA, a pool of 23 samples). But got a large number of unassigned cells, and very few n_vars...

Error in g$grobs[[legend]]: no such index at level 2, when calling peaks

7

I encountered this error during call peaking, while the call peaking process has been completed. However, I got an error message that says "Error in g$grobs[[legend]]: no such index at...