nankaiwolf

icon company Peking University People's Hospital icon location Beijing icon location Respirologist Beginner of bioinformatics

Results 3 comments of nankaiwolf

SARS-COV2

I tried this issue. I use "kreport2krona.py" to convert kraken2 report to krona file, and use "ktImportText" to convert krona file to html file. Then open html in browser.

SARS-COV2

The kraken2 database was built by NCBI database, so the SARS-CoV2 genome can be aligned by kraken2.

SARS-COV2

I updated the (almost) latest NCBI database in February, and have the SARS-CoV2 genome collected in. However, I downloaded the database not by kraken2-build, but used Kraken_db_install_scripts (https://github.com/mw55309/Kraken_db_install_scripts). Changed some...