Nandan Deshpande comments

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                                            Nandan Deshpande

Cant build new (my own) database

Hi I am actually getting the exact same problem as above! I am running the command using a singularity container. singularity exec $base_path/singularity_containers/abricate_1.0.1--ha8f3691_2.sif makeblastdb -in sequences -title PLSDB -dbtype nucl...

can't seem to find a place to store startup environmental variables [with containers]

Hi @AstrobioMike Thanks for your prompt response. I am trying to integrate the tool along with a few others in a nextflow pipeline. So ideally I do not want the...

can't seem to find a place to store startup environmental variables [with containers]

ok. I have not used conda with nextflow- I am assuming it is equally easy doing so? I will give it a try if you think it is. Also I...

can't seem to find a place to store startup environmental variables [with containers]

Thanks . You have been a great help. Appreciate it. I will check the conda way and see if works with my other singularity containers. Theoretically it should, as I...

Supplementary Fig. 7 : Availability Expression data file for Repetetive genes

Hi I have a followup question. I managed to figure out that the novel transcripts.gene models along with ENSG/ENST models and their counts are provided in - combinedExpressionDataTranscript_19June2023.rds - combinedExpressionDataGene_19June2023.rds...