Nicolas Alcala

icon indicating a website link http://rarecancersgenomics.com/ icon indicating an email [email protected]

icon company IARC-WHO icon location Lyon, France icon location Computational Biologist at the International Agency for Research on Cancer-WHO

Results 6 comments of Nicolas Alcala

Put trim_galore into a separate workflow and call it

Wait until implementation of Nextflow DSL2 is complete

Non-integer copy numbers

Hi, I am commenting on this old thread because I have tested matrix generation for PURPLE files and came across some limitations of the rounding. First, be aware that because...

Non-integer copy numbers

Hi Dario, Thanks for following up on this. To my knowledge nothing has changed in HMFTools, so what we do is first round the total and minor copy numbers from...

Auxiliary file not available

Hi! Same issue here. Is there a way to get these files, in particular the sra metadata file which might not be the exact same as just selecting the whole...

Auxiliary file not available

¡Mil gracias por la respuesta tan rapida Pablo! Just sent an email to Hunter. I guess another way to phrase my question was: is there a way to reconstruct this...

Auxiliary file not available

We got the table, thanks! The issue is closed on our side, although I agree with @fzc1997 that putting the auxiliary file in a more permanent location (zenodo?) would be...