Nick Markov comments

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                                            Nick Markov

Inverse Transform + Transform does not produce correct points

@lmcinnes I was just trying the `inverse_transform` method and found out that I cannot reconstruct my original 30-dimensional points which I just embedded on 2d back. Is this expected? Even...

gene expression and proteins together

Thank you @matthewspeir for the examples! @maximilianh We can put ADT together with RNA in the same matrix (currently in a separate), but I guess the main question is about...

Limiting annotations shown

Hi Edwin. I'm not a maintainer of this package, but I can tell you what I know. I don't think there is a way to limit the annotations to only...

Multi GPU training

@adamgayoso sorry, do you have a recipe if I want to enable multi-GPU training of scVI model before it is released scvi-tools? I haven't done multi-GPU training before, so I'm...

Clustermap: Automatic conversion of row/column annotation data to colors

I also think this would be very helpful, I am doing these color conversions all the time. My most recent code to do that boiled down to this, maybe it...

Horizontal plot option

@webermarcolivier do you need any help to merge this in?

Certain type of expressions hang notebook when displaying errors on remote session

Here's the trace, hope it's relevant: https://limewire.com/d/NakA1#NfgSlJ6OZv

Certain type of expressions hang notebook when displaying errors on remote session

thanks for looking into this. Updated to latest versions and disabled all by the 3 plugins: the issue is still there on remote. The issue reproduces when executing the cell,...

feat: make html sanitization optional

I support this feature!