mweberr

Thanks for looking at the example. In my examples, mainly from bacterial genomes, it is actually the first point you recognized : the entire molecule with all genes are reversed,...

Hi had a similar issue. You need to add the orientation also to the dummies : `dummies$orientation

I also would support a solution for long DAG building times, while I am waiting for a 500,000 jobs DAG creation. Wondering if this is feasible at all.

Thank you Sebdu132 for this very interesting explanation. I studied the same plot wondering about the high number of 100% matches. I will implement this in my code to compare...

Hi Charlie, thanks for this great help. It really took a while to digest the different variable types. But know I found the issue. For me I would like to...

Here is an example list of sample names: ``` NA-27750_ID1200_lib8888_7504_1_1.fastq.gz NA-27750_ID1200_lib8888_7504_1_2.fastq.gz NA-27790_ID1201_lib9999_7504_1_2.fastq.gz NA-27790_ID1201_lib9999_7504_1_2.fastq.gz NA-27790_ID1202_lib9999_7504_1_2.fastq.gz NA-27790_ID1202_lib9999_7504_1_2.fastq.gz {A}_{sample}_{lib}_{B}_{C}_{rep}.fastq.gz ``` The A part varies in combination with C, while I have not figured...

I had a similar issue when running multiple parallel SMR runs using Snakemake. It is important to specify a separate working directory for each run, otherwise the default working directory...

I also have the same issue, that the sorted order of the node labels needs to be changed to minimise crossing of flows. Here is the same issue for dhe...

The problem remains with htslib1.21 I got the same issue running following lines of code: samtools view -hb -F 4 -q 2 test.sam | samtools sort -o test_sorted.sam && \...

Thanks for the rapid feedback! I will try to increase SLURM_mem to 128 GB. In case of more memory is even -b8 reasonable? The parameter -g is very interesting as...