Mick Watson
Mick Watson
Hello, was this ever implemented?
Do you have the scripts for creating module_step_form.tsv and etc_module_database.tsv? Either using the API or otherwise?
Easiest way is to figure out which MAGs that DRAM completed for, move the output somewhere else, move the completed inputs somewhere else, then re-run DRAM on the MAGs that...
Yes, I have a Snakemake that breaks the input MAGs up into chunks (e.g. of 50 MAGs each) and runs DRAM on the chunks.
Here is a ggsave example (which apart from looking terrible, also contains right-clipped plots) ```sh layout
Yes, that fixes it, thank you! ```sh ggplot(as.data.frame(Titanic), aes(y = Freq, axis1 = Survived, axis2 = Sex, axis3 = Class)) + geom_alluvium(aes(fill = Class), width = 1/8, knot.pos = 0,...
Did this get solved? I ran into the same problem this morning after installing Kraken2 from conda: ```sh Step 1/2: Performing rsync file transfer of requested files rsync: link_stat "/all/GCF/003/143/375/GCF_003143375.1_ASM314337v1/GCF_003143375.1_ASM314337v1_genomic.fna.gz"...
"Read length should be approximately the shortest length for the sample. It should not impact the estimation too greatly." So after quality trimming and adapter trimming, we should look for...
Same issue, anybody solved this? @Oraclis
You have a zero-length sequence in either your input fastq/a or assembly