Marc Vaudel

Hi, Sorry to read that the tool is running out of memory. It should be possible to read a 3GB file with 30GB of RAM. Would it be possible for...

Yes, it means a bit of refactoring but this is also a feature @david-bouyssie asked for, hopefully we will have the time to implement it during his visit in July.

Hi and thanks for narrowing down the issue this specifically. We are currently refactoring another section of the code and will look into this issue as soon as we get...

Thank you for your answer. It would be really convenient to read directly from the gzipped files because our files are quite huge so it is a substantial gain of...

Hi, Apologies that this is not correctly documented, we will extend the documentation accordingly when time allows. When a peptide is shared between different groups, the spectral counts are distributed...

Hi, Apologies for the delay of our answer. I am sorry but this option is currently not available via command line. We will look into implementing it but cannot give...

Hi Bart, If nothing is suspicious about these mgf files (acquisition and peak-picking are ok), the low hanging fruit is to split your mgf files. I can fix our handling...

Hi Konstantin, Time is flying! Apologies, I have not been able to prioritize this and am not sure when I can finally refactor this code. In the meantime splitting the...

Hi, Currently we don't support command line reshaking. There is no ready made simple solution I am aware of, and you will need to build a pipeline. I think it...

Hi JF, Sorry the details are mainly displayed in the GUI, I see that I need to improve the exports for command line users. Will put this on our list...