Mike Tisza

icon indicating a website link https://tiszalab.github.io/ icon indicating an email [email protected]

icon company Baylor College of Medicine icon location Houston, TX, USA icon location Assistant professor at Baylor College of Medicine. Formerly, Johns Hopkins/NIH. > Virus Discovery, Microbial Genomics, DNA Methylation

Results 5 issues of Mike Tisza

How similar do inputs need to be?

3 comment

Do you have a sense of how similar an input should be to the nearest available reference in NT? Is it more like 99% ANI or 90% ANI? I couldn't...

Request to add tool and other thoughts

2 comment

Hi Rob, I was really excited to see that someone is doing a comparison of different prophage tools. If you are still open to adding more tools for comparison, I...

replace tbl2asn with table2asn

GenBank is phasing out tbl2asn for table2asn https://www.ncbi.nlm.nih.gov/genbank/table2asn/

enhancement

Add newer/additional Kraken DBs for DQT/taxasaurus rex

1 comment

A colleague from the SV Hackathon 2022 shared a link with me to the updated kraken 2 databases, possible useful for the `DQT`/`taxasaurus rex` tool: [kraken2 indices](https://benlangmead.github.io/aws-indexes/k2) I don't have...

adding module to query entire lineages, query_taxon_clades.py, in que…

**Mike's suggestions for minor improvements on this script (`query_taxon_clades.py`):** 1. Change output file format and/or print the result in a more compact format ala the other tool 2. Query the...