Mike Stubbington
Mike Stubbington
Quite a lot has changed in Networkx v2.0 (https://networkx.github.io/documentation/stable/release/migration_guide_from_1.x_to_2.0.html) and it breaks `summarise`. For now, the requirements file specifies v1.11 exactly but we need to add v2.0 compatibility.
The `--loci` command line argument takes a space-separated list of locus names. This means that it *must* be followed by another command line option so that argparse knows when to...
`cell2` and `cell3` test outputs need to be regenerated using the new code that reports CDR3 sequences