Michael Shamash

Add support for YubiKey PIV to step for offline signing (ie. SSH certs)

1

### What would you like to be added As per the title, I think it'd be nice to have YubiKey support in `step` like there is in `step-ca`, so that...

metaSPAdes errors during assembly on only *two specific datasets*: spades-hammer exited with error code -11 (terminated by segfault)

2

Hi, Similar to issue #191 , during assembly of two metagenomic samples, metaSPAdes errors and cannot continue due to spades-hammer segmentation fault during the run. For some reason it only...

Check GTDB database integrity before proceeding with GTDB-Tk classify workflow

1

## Is your feature request related to a problem? Please describe I was using the nf-core/mag pipeline on a bunch of samples recently, and the GTDB-Tk classify workflow step kept...

Add NMS to CoreML model output, works with Vision

16

Reference issues: #5157 , #343 , #7011 The current version of the export.py script outputs a CoreML model without NMS. This means that certain Vision APIs cannot be used with...

Add argument for Guppy "chunks_per_runner"

4

In testing buttery-eel with some BLOW5 data for basecalling, I realized that there is no "--chunks_per_runner" argument that could be set and passed through to Guppy. Is this something that...