Mitchell Robert Vollger
Mitchell Robert Vollger
Of course, also this is easy to work around so not urgent in anyway. I appreciate the tool and all the active development.
My current hacked workaround in case it is useful to anyone else is to mask all aligned sequences in the reference and query and then map again and combine the...
Hi Heng! Thanks for the fix! It seems to be working in my hands as well.  However, one thing I noticed is that a lot of inversions do not...
Thanks @lh3! Out of curiosity was the issue in the beta def region ~6-14Mbp?
@lh3 I wrote a [utility](https://mrvollger.github.io/rustybam/#align-once) that tries to find an optimal split when the same query sequence is mapped twice over multiple alignments. Do you have any examples of this...
So I looked into it, and it is too large (~3.8GB) to install all at once, but I think we could have larger sets of related utilities that could be...
@dpryan79 and @johanneskoester, is it possible to have the resource limit increased so we could make this one package? It would be really useful, I think.
I think there are a little over 300 tools in the Kent/ucsc utils package. (and 42 of those have {bed,Bed} in the name)
I think that is true. However, if we don't bundle them in some way then we might need 100s of different bioconda PRs everytime there is an update from your...