Mohammad Reza Bakhtiarizadeh

icon indicating a website link http://abu.ut.ac.ir/faculty/?ID=mrbakhtiari

icon location University of Tehran, Iran

Results 6 comments of Mohammad Reza Bakhtiarizadeh

Empty sam file

Thanks for attention. Toy example works, So I have to try your suggestion.

Empty sam file

I tried with -m 30, -m 40, -K 50 and -K 90 (my read length is 100). The results are as follow and all of them are same. -m 30...

Empty sam file

./bs3-align -1 test_data/pair1.fq -2 test_data/pair2.fq -o WGBC -f sam -g reference_genome/genome.fa -d reference_genome/ BS-Seeker3 beta Welcome to SNAP version 1.0beta.23. Loading index from directory... 0s. 60856842 bases, seed size 20...

Empty sam file

Sorry, but I revised my previous comment. Toy example works but dose not work for my real data.

Empty sam file

Unfortunatly no. On Wed, 30 Jan 2019, 06:16 lihui215 [image: Boxbe] This message is eligible > for Automatic Cleanup! ([email protected]) Add cleanup rule > > | More info > >...

Empty sam file

I use bismark and BS-seeker2. I belie that the combination of bioinformatics software would be better. On Wed, Jan 30, 2019 at 8:36 AM lihui215 wrote: > [image: Boxbe] This...