mpolemis

Hi Veronica, Just to clarify, the commands I used were directly copied and pasted from your instructions. `git clone https://github.com/insapathogenomics/ReporTree cd ReporTree/scripts git clone https://github.com/insapathogenomics/GrapeTree.git git clone https://github.com/insapathogenomics/ComparingPartitions.git git clone...

Here are the outputs `which conda` `/home/adminhera2/miniconda3/bin/conda` `conda env list | grep reportree` `reportree * /home/adminhera2/.conda/envs/reportree` Cheers

I tried to create a new "test" environment (conda create --name test) and it was created at `test /home/adminhera2/.conda/envs/test` All conda envs on the server are at /home/adminhera2/.conda/envs/

I fixed the envs folder... it was a permissions issue. Now `conda env list | grep reportree` `reportree /home/adminhera2/miniconda3/envs/reportree ` Unfortunately pytest gives the same errors... :(

Dear Veronica, sorry for the delayed responce. Here's the pytest output. [pytest_output.txt](https://github.com/user-attachments/files/20944788/pytest_output.txt) Cheers, Michalis

Here's the output ``` (base) :~$ which conda /home/adminhera2/miniconda3/bin/conda (base) :~$ which python /home/adminhera2/miniconda3/bin/python (base) :~$ conda activate reportree (reportree) :~$ which python /home/adminhera2/miniconda3/envs/reportree/bin/python ``` It seems that the python...

Hi!! Here's the output of pytest from the latest ReporTree environment.. [pytest_output.txt](https://github.com/user-attachments/files/20960891/pytest_output.txt) Here's the screenshot of the new terminal with the commands...  Here's the environment export file... [reportree_mpolemis.zip](https://github.com/user-attachments/files/20960951/reportree_mpolemis.zip) Thank...

Hi Veronica! Please find attached the screenshot showing the output of the commands.  Cheers! Michalis