Lisle Mose

Support for allele only comparisons

7

Hi, Is it possible to use hap.py to make allele only comparisons? (i.e. Can the genotype check be disabled?). I know som.py does this, but I'd like to keep hap.py's...

Thanks for providing this valuable tool! This code change should fix the insert issue others have observed.

Hi, Is there a way to generically set the IGV Browser Configuration Options? https://github.com/igvteam/igv.js/wiki/Browser-Creation#browser-configuration-options I see a subset of the options available as explicit arguments to dash_bio.Igv() However, some options...

Thanks for developing this useful tool. It would be helpful to propagate call quality information to the "atomized" VCF. This would allow RTG's vcfeval to generate ROC information across the...