Oleksandr Moskalenko
Oleksandr Moskalenko
Why would BEAST run an input xml file generated by beauti from beast-1.10.0 when a run is started from the BEAST Java gui, but fail when run on the command-line...
Update minipolish recipe for the 0.1.3 release ---- Please read the [guidelines for Bioconda recipes](https://bioconda.github.io/contributor/guidelines.html) before opening a pull request (PR). * If this PR adds or updates a recipe,...
Hi, Will ASE_ANI work with cuda newer than 9.0? If not, would it be possible to have it updated to support current CUDA release(s)? Thanks, Alex
fastq-sample segfaults while subsampling a couple of fastq files: fastq-sample -n 900000 -o subsample first.fastq second.fastq ... open("subsample.2.fastq", O_WRONLY|O_CREAT|O_EXCL, 0600) = 6 fcntl(6, F_GETFL) = 0x8001 (flags O_WRONLY|O_LARGEFILE) fstat(6, {st_mode=S_IFREG|0600,...
## Operating system Any ## Client version 2.4.0 ## Description of the problem synapseclient spawns too many computational threads. Relevant lines of the code synapseclient/client.py:from synapseclient.core.pool_provider import DEFAULT_NUM_THREADS synapseclient/client.py: 'max_threads':...
cuffdiff built from the current master segfaults when run as follows cuffdiff -p 4 -L ctrl,siCTCF -u ./merged_LNC_CTCF_CTRL/merged.gtf LNC_ctrl_output/accepted_hits.bam LNC_siCTCF_output/accepted_hits.bam -o cuffdiff_LNC_CTCF_CTRL GDB backtrace: (gdb) bt #0 0x0000003926832625 in raise...
When the example is run there is a warning 'Bad quality threshold is !'. Looking at the code it comes from main.cpp:365: fprintf( stderr, "Bad quality threshold is %c\n", badQualityThreshold...
Fixes issue #10
### Bug description The /hub/admin#/ endpoint shows a table of users and their servers. However, in jupyterhub-3.x the sorting seems to be broken. We're upgrading from 1.x where sorting by...
### Version of Apptainer 1.1.8, setuid build, RHEL8 OS. There are no issues with the non-setuid build ### Expected behavior Bind-mounting a local directory. E.g. $ apptainer shell /apps/ubuntu/22.04/container ###...