Mauricio Losilla

seqkit amplicon only keeps one amplicon

5

Hi, In version 0.15.0 seqkit amplicon only keeps one amplicon (the largest) per primer pair. I don't always care about the largest amplicon. Would it be possible to implement the...

Hi, thank you for making pychopper available. I was wondering if I could use it with custom, degenerate primers? either with edlib or through hammerpede. I ran a few tests...

Output of FitMG94

2

Hi, I am trying to understand the output of the FitMG94 model with per branch calculation (--type local). For example, the output for one node is: "Node20":{ "Confidence Intervals":{ "LB":0.05288894421311353,...

install and run RELAX-scan

5

Hi, I can't figure out how to install and run RELAX-scan. I have downloaded and installed hyphy-analyses as explained in this ReadMe: https://github.com/veg/hyphy-analyses. All 21 tests executed by "make test"...