Michael Hoggard

icon indicating a website link https://scholar.google.co.nz/citations?hl=en&user=B6fMVfUAAAAJ

icon company @GenomicsAotearoa icon location Auckland, New Zealand icon location Data science | Bioinformatics and genomics | Environmental science and ecology.

Results 4 issues of Michael Hoggard

Trained models for RNA viruses

2 comment

Hi there, Thanks for your work with DeepVirFinder. I've been trialing it with some environmental metagenome data, but was also interested in whether it would be appropriate for use with...

DRAM-v.py --low_mem_mode breaks distill

Hi there, We have DRAM (1.4.6) set up with the full KEGG database, which has been working ok. But I recently wanted to run some viral contigs using kofam instead...

Update coverage normalisation script(s)

5 comment

MH to replace coverage normalisation steps with updated script(s) (`summarise_counts.py`; `summarise_counts.R`)

Update viral processing steps to VirSorter2 and DRAM-v

2 comment

MH to update viral processing steps to remove `VIBRANT` and replace with `VirSorter2` and `DRAM-v.py`. These are currently the most often used programs for these jobs, and will also more...