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                                            Michael Kunst

problem creating anndata file from MERSCOPE vpt output

Hi @LucaMarconato, yes the data is available on BIL (https://doi.brainimagelibrary.org/doi/10.35077/g.610). But in the meantime I did find a fix for that problem by adding a line to make sure the...

how to handle empty tiles

Yes that helped. Thanks

Mismatch between cell metadata and expression matrix

Yes, the 4334174 cells are before filtering out cells with low average correlation scores (

issue loading MERSCOPE results

Hi @LucaMarconato, yes the data is available on BIL (https://doi.brainimagelibrary.org/doi/10.35077/g.610). But in the meantime I did find a fix for that problem by adding a line to make sure the...