Monika Krzak

icon indicating an email [email protected]

icon company Wellcome Sanger Institute icon location Cambridge icon location Senior Research Associate at Cambridge University doing single-cell omics

Results 4 issues of Monika Krzak

doJobCollection error

Hi, I am running future.batchtools with on LSF cluster and getting error: `Error : BatchtoolsFutureError for BatchtoolsFuture ('future_lapply-1') captured by batchtools: ‘Failed to subset JobCollection using array environment variable 'NA'...

question

problem with SCCAF installation using conda

1 comment

Hello, I have problem when SCCAF is installed using conda. conda install SCCAF seem successful but Im getting error when importing SCCAF in python: `>>> import SCCAF /home/ubuntu/miniconda3/envs/python_env/lib/python3.7/site-packages/anndata/_core/anndata.py:21: FutureWarning: pandas.core.index...

runCORE removes some cells

2 comment

Hi, I am running ascend with the following commands: em

Which data type for clustering

Hi, I have a question regarding the type of data that is favorable for inputting to pcaReduce clustering. Can you suggest if the method works better with raw counts or...