mjsull issues

Results 15 issues of


                                            mjsull

ImportError: No module named importlib

I get the following error when running ~/apps/progressiveCactus/bin/runProgressiveCactus.sh fasta_list workingDir alignment.hal Traceback (most recent call last): File "/hpc/users/xxx/apps/progressiveCactus/bin/../src/progressiveCactus.py", line 43, in from jobTree.scriptTree.target import Target File "/hpc/users/xxx/apps/progressiveCactus/submodules/jobTree/scriptTree/target.py", line 27, in...

Display small contigs as circles.

enhancement

Remove out of frame blast hits

enhancement

move sequence data etc. to a shelve

enhancement

create acyclic graph

This would allow the automatic duplication of repeat regions,

enhancement

Undo/redo buttons

enhancement

Re-adding contig doesn't re-add blast hit

If contig added has a hit to the reference add the blast hit as well.

bug

Add ruler

Allow user to import a ruler with distance markings

enhancement

Allow alignments with no core blocks

enhancement

JOSS review: comments on the manuscript

Hi, just a couple of small suggestions for the manuscript. line 34: insertions/deletions -> insertions and deletions. line 35: Mauve is simple to run but it only shows.... -> Mauve...