Austin Marshall

icon indicating a website link microbemarsh.github.io

icon company Houston Methodist Research Institute icon location Houston, TX, USA icon location Postdoc focused on microbial genomics. Bridging the gap between biologists and computer scientists.

Results 7 comments of Austin Marshall

Report "unused reads" back to the user

I think it would also be useful to report the .gfa files from the assemblers to view the MAGs with [Bandage](https://github.com/rrwick/Bandage)

GOterm analysis for Arabidopsis not working

I am having the same issue

9.4.1 simplex errors with sup and hac models on M2

> Hi @dbernick @j-jamshidi @chilampoon, > > We've been improving the stability of basecalling on Mac in recent releases. > > Are you still experiencing issues? > > Kind regards,...

9.4.1 simplex errors with sup and hac models on M2

Only 16 Gb of RAM, I can set the batch / chunk size if you think that may be the issue

Python errors in running GenoVi

Same here, I really don't want to have to reassemble to visualize

[feature request] 10x chemistry autodetection

I just wanted to add to this, I would really appreciate if you could include the 10X ARC multiome chemistry in this auto barcode detection. The cellranger-atac workflow allows for...

merge_phyloseq deleting samples

I had a recently had the same issue and was because of spaces after the sample names, might want to check into that. Best of luck, Austin