Mike Francis

icon indicating a website link https://scholar.google.com/citations?user=Tv4MzpsAAAAJ&hl=en

icon location Quantitative genetics, GWAS, genetic epidemiology, gene-diet interactions, data visualization, vegetarianism.

Results 9 comments of Mike Francis

loading kableExtra seems to break the skim html output

Is it possible to put a note about this in the skimr vignette? I'm new to skimr and just spent a couple hours trying to fix this before coming across...

Weird grey lines

I see that when the input P-values are lower than the second number in the "threshold" parameter these grey lines appear. I've found a workaround was just to change that...

Weird grey lines

Hi @YinLiLin . This did not fix the holes. I will email you the data, thanks!

Allele flipping for all SNPs?

I can't imagine there are any new METAL users that do not waste several days trying to figure this out (myself included). Why not fix such a large and confusing...

.tabset-dropdown's menu right icon doesn't render properly with self_contained: false

Similar to @alenastern I am also still having this issue...does a solution exist?

.tabset-dropdown's menu right icon doesn't render properly with self_contained: false

It works! Thank you.

Question on PRSice-2 section results & documentation

Hi, I just did this tutorial today so I'm not an expert with the software but.... Using the provided QC file, I got this in EUR.summary: Phenotype Set Threshold PRS.R2...

How to set col with just one color?

That gave me this error: Error in if (col == "greys") { : the condition has length > 1

Faster extraction via StringIO

Hi, I ran into the same slowness issue and made this script to chunk extract_tracts.py into an arbitrary number of processes which can be run in parallel, and then merge...