mherold1

Question on assembly strategy

1

Hello, Maybe I have missed this somewhere but I am a bit confused on how multiple samples are handled in the pipeline or should be specified as input. In my...

Question on min-covered-fraction and total read counts

1

Hello, thanks for providing the tool. When testing I looked a bit at samples with low mapping% and noticed that setting `--min-covered-fraction 0` changed % reads mapped from 17% to...

Hello, thank you for providing the tool. The new short-read prediction mode seems very promising (https://www.biorxiv.org/content/10.1101/2025.09.18.677194v1). I have been trying to test it, for now, with reads from isolate genome(s)....