Melissa Gymrek
Melissa Gymrek
What version of IPython notebook are you using? On 2.3.1 it is working fine. If you run on the IPython command line, it will print the class instance. In the...
Which version are you using? I don't see this issue with the latest version on github (3.0.3.22-c37a)
seems this only happens when using the old noise model (illumina_v2.0.3) with lobSTR3. We need to generate a new noise model for not-PCR free data with the new lobSTR3 and...
Thanks for point this out. While technically we could have an allele of size 0, I think in almost all such cases it would be a calling error on our...
Thanks for the suggestion! No specific plans right now but it would be a great feature. Any interest in implementing? :). Anyway it'd be great to discuss a plan here..
Could you provide code for an example where you get this error? Thanks!
It should be possible with this package, but this is now more easily accomplished in seaborn by plotting a swarmplot and boxplot on the same axis using the same data....
Thanks for sharing this. The "train" feature has not yet been updated to deal with BWA-MEM generated BAMs and for now must be run on BAMs generated by lobSTR. I...
Thanks for sharing this issue. Would you be able to share (1) the exact commands you used and (2) a minimal VCF (e.g. header + 1 locus) that exhibits this...