mglgc

Error: OS return value: -11

7

### Description of bug Hi Spades' developers, I get the below error message ending the spades.py running: * system call for: "['/home/mario/SPAdes-3.15.5-Linux/bin/spades-core', '/home/mario/JuanCarlos_UCM/spades-all_bact/K21/configs/config.info', '/home/mario/JuanCarlos_UCM/spades-all_bact/K21/configs/careful_mode.info']" finished abnormally, OS return value: -11....

Error with createVCFplot(VCF) function

2

Hi, After a successful plotVCF installation under R-4.2.0, the createVCFplot() function with the example shows next error message: -> loading VCF file ... -> passed VCF file extension: gz ->...

First of all, I want to thank you for freely making available your software development to the scientific community. All tries to run any analysis with different vcf.gz sample files...

fungi reads

1

Dear RAPT developers, The documentation explicitly says that RAPT handles bacterial or archaeal reads, but I wonder whether fungi reads (even being from eukaryotic) can be processed also. Thank yout...

> Thanks for contacting us with your error log, sorry you've again encountered a problem with this. > > I see in NCBI's web logs that your first step (whose...

Failure for RAPT testing mode

2

The ./run_rapt.py --test command outputs some error messages below as contained in the verbose.log file. My institutional firewall has the https:443 port open for next servers: www.ncbi.nlm.nih.gov locate.ncbi.nlm.nih.gov sra-download.ncbi.nlm.nih.gov Please,...

RAPT running failure

9

The ./run_rapt.py --test command outputs the below error message contained in the verbose.log file. Please, could the developers contribute with any hints to fix it? Thank you in advance. [2020-11-21...

csaw_workflow.R script: Error in (function (classes, fdef, mtable) (csaw_workflow.R#116): unable to find an inherited method for function ‘seqinfo’ for signature ‘"NULL"’ #15

2

First of all, I'd like to thank you for making freely available your pieces of R code for ATAC-seq analysis. Running the csaw_workflow.R script under R 4.1.2, the line instruction...

[Bug-gmx_MMPBSA_ana]: Could not import PyQt5/PyQt6

3

### Bug summary Under a gmxMMPBSA conda env with a successfull gmx_MMPBSA_test running, gmx_MMPBSA_ana execution renders the error. ### Terminal output ```bash ERROR:root:MMPBSA_Error Could not import PyQt5/PyQt6. gmx_MMPBSA_ana will be...

--peptide_sequence option not working

11

Patrick, thank you very much for your software. I was testing the installation and it run successfully. Because I can't find any info about the using of the peptide_sequence option,...