mgabriell1

Excessively long easy-taxonomy against NR

1

Hi, I am trying to get the taxonomy of several contigs present in a multi-fasta file, but I'm having some issues with the `easy-taxonomy` command, as it is has not...

[MetagenomeSimulationPipeline] [Errno 24] Too many open files in line 99

10

Hi, First of all thanks for developing and maintaining this tool! I'm simulating a 5 samples (5Gbp each) using two communities derived from the supplied genomes, but eventually, after the...

DivNet on rRNA gene counts derived from metagenomes?

7

Hi, First of all, thanks for developing this tool! I have a few metagenomic samples from which I've estimated the number of couple of reads mapping in proper pair to...

Exploit gapfilled model for metabolic comparison

5

Hi, First of all thanks for developing and maintaining Gapseq! From what I've understood the *-Pathways.tbl file summarise the completeness of the MetaCYC pathways found in the genome analyzed. After...

Flat and "gappy" error model for PacBio Revio Kinnex 16S

2

Hi, First of all thanks for developing and maintaining DADA2! I want to analyze the 16S rRNA sequences obtained from a PacBio Revio machine which were prepared using the Kinnex...

Hi, Thanks again for maintaining DADA2! I have a question regarding the sensitivity of the pipeline, especially in the case there are clades of specific interest which might be rare....

Comparison of amino acid auxotrophy prediction with GapMind

3

Hi, First of all (once again) thanks for developing this tool! I'm opening this issue because I've noticed some discrepancies between the results of auxotrophy prediction of `gapseq` and `GapMind`...