mfreidin1975

Something missing in singularity container

1

Hi Alessia, Here is the command I run ### nextflow run YAMP/YAMP.nf \ --reads1 /scratch/microb/xyz_1.fastq.gz \ --reads2 /scratch/microb/xyz_2.fastq.gz \ --prefix XYZ \ --mode QC -profile base,singularity ### And this is...

More species that it was before

1

After running bit to combine taxonomy, I ended up with more taxa than I had before. i.e. after running bracken, I had about 7000 species, but after running bit, there...