Gulnara Tagirdzhanova

metaspades error code -11

6

Hi guys, I've run into an issue running SPAdes in metagenomic mode. Filtering singleton k-mers of the forward reads takes only a few minutes, but then SPAdes gets stuck on...

Funannotate update: Feature overlapped by 2 identical-length genes but has no cross-reference

1

**Are you using the latest release?** I'm using the latest version available in docker (v1.8.15) **Describe the bug** After I ran funannotate update, I got a message about several gene...

installation failed: SummarizedExperiment

1

Hi there, I'm getting an error while trying to install the package. Below is the output when I try to install the lite version, but I get the same error...

false negatives?

3

Hey! I do have another question! After annotating my MAGs, I saw that FeGenie didn't find any transport-related clusters in any of my MAGs, which wouldn't make sense biologically (I...

interpreting starfish insert error

4

Hi Emile, Thanks for the great tool! I've been running it on a couple of genomes I'm working with. I followed your tutorial and was able to idenitify some tyr...

Hi there! I ran into a problem with running sleuth on an MacBook Air with a M1 chip and 16 Gb RAM. When I'm trying to read in kallisto data,...