Ray

Thank you for the quick reply! Do you think it has something to do with me setting the min-mapq to 20? Do you think I should instead set this to...

對多音字（異讀）或多音多義字（破讀）的處理問題。如果可使用HMM，或者DEEP LEARNING來自動根據上下文建議用字，對於多音字，再考慮到意項，那就完美了。 自然，這對於TTS也是很有幫助的，就是自動依照上下文決定適當的讀音（中古音/現代方言音/普通話）。 舉個例子：“復”作恢復、回復解的時候讀房六切入聲，中古 *biuk, 粵語fuk6, 普通話fu4. 作“再次”解的時候，讀浮富切，中古 *biou, 粵語 *fau6, 普通話fu4. 由於所有現代漢語方言以及域外方音（越南語、朝鮮語、日語）主要都來源於廣韻系統，所以初步想像如果內部數據使用廣韻系統，則可較為容易的映射到任何一種現代方言的語音系統裡面。

還有一個好處就是，判斷音韻不再需要硬性記錄某字所屬的小韻，只須判斷其韻母和韻腹在所映射到的方言中是否一樣，就知道能否通押了。 例如在平水韻裡面，一冬二東可以通押，但廣韻不行。在數據映射裡面，可以簡單記錄為合併廣韻的一冬和二東，那新的數據庫就建好了。 判斷平仄則更為簡便，所有廣韻中的上去（可以數字2、3編碼）入聲（從韻尾是否收-p -t -k 可判斷）都是仄聲，就不需要再逐字描述了。

Hi Olga, Iteration 0 should correspond to the output of step.0, which has been through one round of scaffolding but without before any correction. Therefore the 19 chromosomes are just...

Hi Olga, I think it's easier to just write you an email. I couldn't seem to find your email address, could you let me know? Thanks! What I meant was...

Dear Li, Thank you for the quick reply! For the last step, is there a way to automate the process? I could write a script for it in case you...

Sorry I meant tblastx. On Nov 28, 2016 9:33 PM, "Ray Cui" wrote: > Dear Li, > > Thank you for the quick reply! > > For the last step,...

Hi Li, no problem, please take your time. Let me know when this script is ready. If I want to use a protein database, like taxonomic specific uniprot, is it...

Ok, thank you for testing! Ray On Nov 28, 2016 10:26 PM, "Li Song" wrote: > I just tested blastx with one sequence and I believe the script will work...

Dear Li, thank you for your fast response. I will test this script. In your paper you have compared Rascaf to two other RNA scaffolders. I am aware of an...