meaksu

Seurat Merge Error

5

Hi, I'm getting an error when trying to merge two Seurat objects: `> myeloid_subset

Meta regression steps and Error

1

Hi, I'm trying to use the CSIDE.population.inference function to perform meta regression. I have a batch variable and a group variable and want to control for the batch while testing...

CSIDE results csv files all vs. sig

1

Hi, I had a few questions about the raw data results when running CSIDE, as in run.CSIDE.single, for different cell types. This generates an "all_celltype.csv" file and "sig_celltype.csv" file for...

Ideal Cluster Number

1

Thanks again for developing this package I was wondering if there are any more quantitative ways to determine the ideal number of clusters other than the qPlot elbow graph. I...

Hi, I'm trying to use the RunBanksy function with a merged Seurat Object of four Visium HD samples. I'm running into the following error about negative length vectors. Is this...

Bulk vs. Single Cell difference

5

Hello, I have long-read single cell data that I have run as bulk data without specifying the barcode, and also run as single cell by specifying the barcode. The bulk...