María de Toro

thank you for your comments, today, after reinstalling all the packages I have found a new error, it seems to be Kegg database kk_up = enrichKEGG(gene = gene_up, organism =...

Hi! I was trying FastP with smallRNA data and efectively, FastP does not detect these adapters.

Indeed, I'm trying to include a fasta file with the adapters to check... and I obtain this error: ERROR: the adapter can only have bases in {A, T, C, G},...

Hi! It's me again! I solved the problem importing files in other form (different than explained in the tutorial vignette). I leave here my solution, just in case somebody need....

For me, it works with Kraken2 output, but I cannot retrieve taxonomic information (only TaxID). Does somebody know how to solve it?

I mean I obtain the biom file ( I convert to csv to visualize) and I only observe the TaxID column and each sample column, but no more.

Thank you!! I completely forgot the --header-key option! Thanks!

Thank you very much for your quick response! I've tried opening python but it does not work. Packages are: # packages in environment at /home/pgen/miniconda3/envs/viromeqc: # # Name Version Build...

I tried to create another environment for python3.6 (recommended at the README file) called "prueba" but the error is the same: ``` (prueba) pgen@pgen:~/sw/viromeqc$ python3.6 ./viromeQC.py Failed in importing Biopython....

Thank you for your answer, I attached to you the output, it does not return any error ``` (base) pgen@pgen:~$ conda activate prueba (prueba) pgen@pgen:~$ python Python 3.6.15 | packaged...