Matthew Hall

geom_treescale and layout="fan"

4

``geom_treescale`` interacts oddly with the fan layout: * If you give x and y they are actually interpreted as r and theta (polar coordinates) * The units for y are...

Figure dimensions inconsistent between MacOS and Windows in PDF output

2

When knitting some types of image to PDF, the dimensions of the image differ by OS. For example: ```` --- title: "Mac/Windows knitr PDF differences" date: "04/10/2021" output: pdf_document ---...

Feature request: scale_x_upset order_by weighted frequency

1

I've been using ggupset for datasets where each datapoint has a weight, but when you set the `weight` aesthetic in `geom_bar`, the order generated by `scale_x_upset(order_by = "freq")` is still...

Some potential tree input (e.g. RAxML bootstraps) have no branch lengths. At present phyloscannerR cannot deal with these. The easiest solution is to give them arbitrary lengths and warn the...

geom_flow does not work properly with ggnewscale

1

### Description of the issue If you try to use ggnewscale to have different fills for flows and strata, then one of them will not show up. (This does not...