mdbarnesUCSD

Add support for VCF inputs for SV Matrix Generation

5

- Add support for VCF inputs for SV matrix generation - Update README

- Apply black automatic formatting - Apply SigProfilerPlotting's process_input to input data

* Use SigProfilerPlottings custom_text_upper and custom_text_middle to include the stability and mutation count to the de novo signature plots for SBS4608.

This repository, **SigProfilerSingleSample**, is no longer maintained. Its functionality has been incorporated into the **[SigProfilerAssignment](https://github.com/alexandrovlab/SigProfilerAssignment)** repository. ### Why is this repository deprecated? SigProfilerAssignment offers an updated and more comprehensive solution...

- Add parameter Seeds to enable reproducible runs.