Spidery

I have related question. Is there a way to only print the labels on terminal nodes? Or maybe an arbitrary set of taxon levels, such as Genus, Family, and Order?...

Thanks so much zachary-foster! I used a clunky regular expression code, and it had some problems. This is perfect, for first question. I'll try playing with ggplot2, thanks for letting...

Hi Taylor! I've been wanting to do the same thing! Here is a very arduous way to do it... I found where the labels are placed on the plot by...

Hi matt-bakker I was wondering the same thing! Perhaps emailing Dr. Didion would be appropriate? Have you found an answer to this question? What has worked for you?

I found the following worked...but I still don't know what different numeric values would do. Min number of high-quality "G's" in a row, to be trimmed? atropos trim -b MYADAPTER...

Hi Dr. Didion! Thanks for quick response! So --nextseq-trim - 1 is the "default" setting? And for each base, the quality score is the phred score (1-40)? So --nextseq-trim is...

Here is example of changing --nextseq-trim parameter, on a particular read in a fastq file: trimmed read with nextseq-trim argument of 33: @VH01196:8:AAGGC7GM5:1:1101:21280:1700 1:N:0:GAACTGAGCG+CGCTCCACGA CTGCCCTTTGTACACATCTCCGAGCCCACGAGAGATGAAGAACGAAGCGAAACTGTCTCTTATACACTCTCCGAGCCC + CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC same trimmed read...

Now that does make sense. Thank you so much! *-* *Michael C. Davis* Meridian, ID, USA On Wed, Apr 23, 2025 at 4:07 PM John Didion ***@***.***> wrote: > *jdidion*...