Maria Doyle
Maria Doyle
At least not for me. If you have a collection with multiple datasets you only get one result with MultiQC. Looks to be because all samples get given the name...
Do you have any recommendations for visualising the output of test_gene_overrepresentation? Can it/should it use a clusterprofiler viz method: https://yulab-smu.github.io/clusterProfiler-book/ or a ggplot2 one?
Hi, I was having issues with `make serve` and ended up doing a fresh clone of this repo. But when running `make create-env` (as [here](https://training.galaxyproject.org/training-material/topics/contributing/tutorials/running-jekyll/tutorial.html)) I get the error ```...
Hello, I've been trying out whippet v0.11 with some stranded RNA-seq data and obtained a weird result. With whippet_quant.jl and `--stranded` I get only a small % of reads mapping...
**Describe the bug** Appears when clicking on links **To Reproduce** e.g. click on Ribotaper below (but happens with other (all?) tool links) Then you get: ![screen shot 2019-01-18 at 2...
Heya, I just found I do not seem to get the same result with the base R and tidybulk code for the keep_variable genes e.g. these gene ids ``` counts_scaled...
A request from the Bioc RNA-seq lesson development meeting we're having now, @tobyhodges suggested adding here. It would be nice to be able to generate all code blocks from a...
Hello, I'm helping some researchers analyse some zebrafish data and just discovered the zebrafish STAR index (danRer11) in EU contains the alternative haplotypes. Afaik the alts shouldn't be included, see...
Because of things like https://github.com/usegalaxy-eu/usegalaxy-eu-tools/issues/103 https://github.com/usegalaxy-eu/usegalaxy-eu-tools/issues/104 was just wondering if it'd be possible to have an automated way to scan for duplicate tools in the tool panel? As from a...
Adding that bug I mentioned here to keep a note of it, got it with tidySE v1.7.2 ``` These work se %>% slice(1) ``` ``` se %>% filter(time == "Day0"...