Max Bertolero
Max Bertolero
@m-reuter @iabraham have either of you tested the new FastSurfer outputs into fmriprep?
awesome, thanks so much @iabraham !
Got it, @jbh1091 is working on it for now.
@mattcieslak can we use Matthew Brett's code for the `avscale`? https://github.com/matthew-brett/transforms3d/blob/main/transforms3d/affines.py
Great, we are testing it now. Also, fsl.merge and fsl.splitare only used in https://github.com/PennLINC/qsiprep/blob/master/qsiprep/interfaces/images.py which looks specific to FSL, mcflirt, ie stuff we won't run. Is that true?
''' Participation coefficient is a measure of diversity of intermodular connections of individual nodes. Parameters ---------- W : NxN np.ndarray binary/weighted directed/undirected connection scipy.sparse.csr matrix ci : Nx1 np.ndarray community...
I think this works for all cases. I didn't test a directed graph, though.
going to fix this by reading in the mcflirt values
Any interest in this? I could probably help out soon.
Modularity is certainly a reasonable thing for directed graphs, but I don’t think the jury is out on how to handle the directed edges, as directed edges let you measure...