ShengHaoLin

icon location I am bioinformatician experienced in transcriptomic studies and genome assembly.

Results 4 issues of ShengHaoLin

lacks elements in /scratch/mdegenna/slin023/funannotate/dikarya/prfl

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Hi, I used funannotate 1.8.3 to run the genome annotation. But I ran into these errors while running `funannotate predict` : ``` `WARNING The dataset you provided does not contain...

Genemark errors: OSError: [Errno 20] Not a directory

Greeting, I have received this error message while running funannotate prediction, it seems there is something wrong with Genemark: `Running GeneMark-ES on assembly Traceback (most recent call last): File "/funannotate/bin/funannotate",...

FileNotFoundError: [Errno 2] No such file or directory:masked_pasa.pasa_assemblies_described.txt during funannotate train step

**Describe the bug** I used this command to proceed funannotate train step, and I encountered with some errors associated with PASA. I did not use RNA seq libraries because I...

segmentation fault during juicer pro

Greetings, I ran into segmentation fault message when I tried to produce .fasta file after manual correcting contigs in juicer box, these are my commands: ``` #!/bin/bash #SBATCH --qos normal...