mayishazn

On the jupyter notebook version I have a line in my code setting a minarea=100 and then masks, flows, styles = model.eval(imgs, diameter=diam, channels=channels, do_3D=False, min_size=minarea, resample=True, progress=True) It takes...

To add more details - I have watched the RAM increase as it went through a batch of 5 images. Even after running: del styles del names del imgs del...

I've tried reinstalling anaconda, making new environments, and reinstalling cellpose at least a dozen times

Mine is doing the same thing but for much smaller images 2048x2048. It seems it does not clear memory between segmentations. I dont have a "real" fix but this is...

Well part of the reason I wanted to fix masks in cellpose2 is because cellpose3 takes up all my RAM. (See suspected memory leak issue: https://github.com/MouseLand/cellpose/issues/921

Also it seems this still sometimes but thankfully not always happens on cellpose3. Or like I'll draw the mask and it doesnt show up. -Particularly when editing a single frame...

Ya this still happens on cellpose3 (even after upgrading) 


So what seems to work but isn't great is I reinstalled cellpose 1, went in the source code and swapped all the instances of np.bool to bool and np.float to...

> someone have any solution??? So what seems to work but isn't great is I reinstalled cellpose 1 (pip install cellpose==1.*), went in the source code and swapped all the...