Michele Mattioni
Michele Mattioni
Dockerizing the application.
We have CWL1 workflows that works well on Cavatica, but that when it gets loaded on Rabix Composer shows 24 errors. This is the workflow: https://cavatica.sbgenomics.com/public/apps#kids-first-drc/kids-first-drc-alignment-workflow/kfdrc-alignment-bam2cram2gvcf/ It would be great...
Right now the code view shows only JSON representation. It seems the community is preferring YAML, especially for CWL-1 representation. Would be possibile to have the code view to show...
I've tried to run Rabix on Windows 10 Professional, but it does not run. Can't report the error exactly, but the location of the json file is properly resolved, instead...
The warning from sphinx should be print from the gh_pages_build task in a verbose mode otherwise is not possible to solve the problem. ``` ---> github.tools.task.gh_pages_build ---> github.tools.task.gh_pages_clean Update/reset "docs/_build/html"...
I've cloned the repo but I think the main script is missing! Where is inkscapeslide? According to the doc to generate slide you've got to run ``` inkscapeslide.py Wireframes.svg ```
Neuronvisio uses the NEURON readxml parser to load NeuroML file and does not deal with it directly. Single Cell works ok, however Network doesn't. Check the example @ https://github.com/mattions/neuronvisio/blob/master/examples/cerebellum_network/NeuroML/Ex6_Cerebellum_networks.xml where...
It would be great to have an automatic test that checks if we can run the models in ModelDB that are listed already in the xml. We can do this...
``` In [2]: NEURON: lambda_f error: 0 diameter for 3d point 0 of soma. near line 0 {forall SectionList[9].append()} ^ execerror("lambda_f error:", "0 diameter for 3d point 0 of soma.")...
We now use BeautifulSoup3.2, bundled with Neuronvisio source code. Given the fact it's on pipy http://pypi.python.org/pypi/BeautifulSoup/3.2.1, I was thinking that we may can extract it from the source code and...