Matt

think there might be a bug in how the 'stats' and 'filter' commands interpret min/max size as the numbers don't seem to add up? suspect one is filtering by >...

json produced by perl scripts not working?

4

i have the program working locally (tested it on the example jsons provided). However, it displays a blank white screen when i substitute these for my own jsons generated by...

Dockerfile bugged

1

Couldn't build the Dockerfile successfully. Seems to be fixed by modifying the first RUN command to "apt-get update --allow-releaseinfo-change"

mixed dtype for BINID can cause bins with same IDs to be split into separate bins

1

if BINID is a mixture of strings/ints I've noticed that individual int values can be imported as both strings and ints essentially splitting a single bin into two. I believe...

Make_kreports.py breaks if all reads unclassified

1

if all sequences have a taxid of 0 then I get the following Traceback (most recent call last): File "/home/OXFORDNANOLABS/mheatley/miniconda3/envs/krakentools_v1.2/bin/make_kreport.py", line 199, in main() File "/home/OXFORDNANOLABS/mheatley/miniconda3/envs/krakentools_v1.2/bin/make_kreport.py", line 174, in main...