Matt Cieslak

matched shore computation to brainsuite

23

Hi Dipy community, @dvya and I went through the Dipy 3dSHORE implementation and compared it to the BrainSuite implementation. We found a difference in the number of bases generated in...

FIX: Change reader to also support tck files from mrtrix3-dev tckedit

8

The mrtrix3-dev and 3Tissue versions added a new `"END"` string to the header of tck files that come out of `tckedit`. This was causing an error in the tck reader....

[ENH] Ingress HCP preprocessed data

1

HCP preprocessed data has comparable quality to QSIPrep-preprocessed data. Since so much HCP preprocessed data is available, we should be able to load it directly into the reconstruction workflows.

May be useful for infants and primates

DKI Setup

1

@arokem Opening an issue on this, I have a couple DKI questions for you too. I currently only have the min and max clip values for mkt, etc enabled as...

the dsi studio recon test was lost in the move to multi-stage builds/tests.

Adds a datasink for the T1w-to-acpc transform file (#313, #305)

[ENH] Add PyAFQ reconstruction workflow

1

TODO: - [x] Add PyAFQ to setup.cfg. Pin to a version? - [x] Add to PyAFQ: Specify output directory - [x] Add to PyAFQ: Specify participant label - [x] Create...

What to do about different FoV's

3

# Background FSL-style bvec files specify gradient directions in the reference frame of the image axes. The affine of the corresponding 4D image can be used to get the gradient...