Matt Graham

Expose interval option in command-line interface

1

Related to the discussion in #169, I've found that the memory overhead of using `pyinstrument` to profile long-running (several hours run time) scripts using the command-line interface with the default...

Adding notebook demoing using Mici with PyMC3 model

3

This is intended to address #3. It adds a tutorial notebook explaining how to sample from the posterior defined using a PyMC3 model using Mici. A hierarchical linear regression model...

In equation (1.20) the negative log-likelihood (for the overall dataset) is defined as the mean of the negative log-likelihood terms for the individual datapoints - that is, the sum is...

Add option to show total time including children in flat profiles

1

Adds a literal string argument `flat_time` to `ConsoleRenderer` which can be used to set frame time type displayed (and used as sort key) in flat profiles - `"self"` for total...

### Describe the Bug MkDocs documentation in template doesn't include submodules of top-level package in API reference as we don't [enable the `show_submodules` option](https://stackoverflow.com/a/74237199). ### To Reproduce Create an instance...

Task: Make this repository citeable

7

### What needs to be done? We should add a `CITATION.cff` file to make it clear how to cite this repository itself, particularly as we're starting to think about advertising...

[TASK]: Agree on and potentially document a process for recording outcomes of off-GitHub discussions

2

### What needs to be done? Following on from discussion in thread of #288. We sometimes have conversations about this project off-GitHub - for example during the semi-regular in-person hackathon...

Switching to `pyproject.toml` for specifying package metadata

1

Switches from current `setup.py` approach of specifying package metadata to instead use [a `pyproject.toml` configuration file](https://packaging.python.org/en/latest/guides/writing-pyproject-toml/) and sets up [`setuptools_scm`](https://github.com/pypa/setuptools_scm) to automatically set package version number from Git release tags....

Making FabSim3 installable as a Python package using an existing build backend

7

### Is your feature request related to a problem? Please describe. Currently FabSim3 uses a bespoke approach for having users install the application via the `configure_fabsim.py` script, and the `fabsim`...

Allowing finer grained control over random variate generation

1

In quite a few places in the main (non-test) code, random variates are sampled using functions in the top-level `numpy.random` namespace which map to the methods of a (globally shared)...