Marina

behavior session 875471358 has incorrect stimulus and errors on loading the dataset

10

behavior_session_id = 875471358 has a few issues with it. First, the behavior_session_table says the session_type is OPHYS_6_images_A, however that session_type should not exist for VisualBehaviorMultiscope experiments because the novel image...

consistency in time columns of stimulus_presentations table

2

In the `stimulus_presentations `table of the `behavior_ophys_experiment_dataset `class (AllenSDK 2.12.12), there are columns called `start_frame`, `stop_frame `and `start_time`, `end_time`. I propose renaming `stop_frame `to `end_frame `for consistency. This would impact...

Filter pupil_width and other eye tracking columns similarly to pupil_area

5

Outlier removal and blink filtering was applied to `pupil_area`, `eye_area`, and `cr_area `in the `eye_tracking `attribute of the `BehaviorOphysExperiment `class, however a few additional columns were overlooked and should also...

It would be useful to have the `imaging_plane_group `and `imaging_plane_group_count `values that are currently available in the SDK dataset object `metadata `attribute also in the cache tables, including `ophys_experiment_table `and...

consistent naming of change column across tables

2

**Describe the bug** There is a column present in multiple tables in the Visual Behavior `behavior_ophys_experiment `class with a Boolean indicating whether a stimulus was a change or not, however...

remove unecessary columns in stimulus_presentations attribute of BehaviorOphysSession and BehaviorSession

7

**Describe the bug** `BehaviorOphysSession `and `BehaviorSession `attribute `stimulus_presentations `currently has 2 unnecessary / uninformative columns - `image_set `and `index`. These should be removed. With allensdk rc/2.8.0 

VB cells table has more experiments than experiments table

2

AllenSDK 2.12.4 Checking the number of experiments in the `ophys_cells_table `and the `ophys_experiment_table `using` .from_S3_cache` gives a different number of experiments  Not sure why this is the case! Happy...

loading behavior_ophys_experiment is very slow

23

**Describe the bug** Recently loading the `behavior_ophys_experiment` object using the code below has become extremely slow. It used to take a few seconds, now it can take on the order...

**Describe the bug** I am trying to look at data from `mouse_id `603892 from `LearningmFISHTask1A `project code and the experiment I am looking at (`ophys_experiment_id`: 1155949168, `ophys_container_id`: 1157145092) does not...

**Describe the use case that is addressed by this feature.** In most cases, users only want to analyze ROIs that have been declared as valid by the ROI filtering process...