SenMA
SenMA
Thank you very much for your reply, which is of great help to me
@auton1 I want to confirm the accuracy of the following results. i plot YRI(with 96 samples as n=192 ) interval and rhomap as follows: and rhomap : It all rely...
@auton1 i use vcftools to get ldhat.sites and ldhat.locs lkgen -lk lk_n192_t0.001 -nseq 96 to get a new new_lk.txt with rhomap: rhomap -lk new_lk.txt -burn 100000 -its 1000000 -samp 100...
@ekg @auton1 Thank you very much for your explanation. I know that MHC Class-II genes may be very complicated to count the recombination.What I want to do is make sure...
@auton1 I have another question. To convert result of rho to centimorgan,as i see on https://github.com/auton1/LDhat/issues/18 if i use likelihood lookup file of n=192, theta=0.001 per site,and just let's assume...
Can Kourami work on hg19 ref samples? and by the way,how can i use Kourami on WES samples (maybe hg19 ref or hg38 ref)?