Muhammad Arshad
Muhammad Arshad
Hello, I already have several bins/metagenomes that I obtained from other software. I only want to estimate gene abundances from these bins. I know squeezemeta can estimate gene abundance from...
I ran the following command to install graphlan: `conda install -c biobakery graphlan` Here is the error I got. `Collecting package metadata (repodata.json): done Solving environment: failed with initial frozen...
Hello, I tried running export2graphlan.py but get the following error: ` File "/myname/metaphlan/export2graphlan-0.22/export2graphlan.py", line 23 def scale_color((h, s, v), factor=1.0): ^ SyntaxError: invalid syntax` Please help me in fixing this....
Hi, I am stuck with minor issue of cladogram. When I get cladogram, the text on the tree branches overlaps. Is it a way to make the font size small...
Hello, I have the raw read counts and I generated the boxplots with your application on NASQAR. The boxplots look beautiful, however, I don't see option to add statistics or...
Dear, I obtained the gff file by running repeatmasker with -gff flag. Then I converted this gff2 into gff3 with rmOutToGFF3.pl script. Next, I converted this gff3 file into GTF...
Hello, I merged several kraken2 reports using this command: `combine_kreports.py ` It works fine but I am confused about let's say first sample has two columns i.e. 1_all and 1_lvl....
Dear team, Thank you for developing such a useful package. I have used its web version for visualization of multiple PCAs, however, I can not use its multifactor exploration function...
Hello, I ran rgi main for genome assemblies as below: `rgi main -i sample1.fasta -o sample1 -a DIAMOND -n 24 --clean` Then I ran rgi heatmap as below: `rgi heatmap...
Hello team, I have data from the above mentioned markers. How should I go about analysing them using kraken2? Is there any kraken2 database available for taxonomic classification? I would...