markphillippebworth

Results 8 comments of markphillippebworth

Monocle3 output directory not being created - Error in pdf(path, width = 6, height = 6, useDingbats = FALSE) :

I was able to fix the problem that way too. Looks like ArchR's wrapper doesn't make the Monocole3 folder.

Bug in addBgdPeaks() function

I was able to track down this bug. It's related to the current peakset, which in the above example is 385655 long, while the previous peakset was 385461 (in this...

Possible to not plot set size?

I've hit the same issue. set_size.show = FALSE is ignored. ComplexUpset plot lacks the ability to nicely convert a list to the matrix for plotting (as UpSetR does), and doesn't...

GroupCoverage file path doesn't update saveArchRProject

The error is related to paths to Group Coverage files. Unlike the ArchRProject itself, it seems that saveArchRProject does not always update the paths to the GroupCoverage files, mean that...

Feature requeste for full join of GRanges

This is a fantastic package, and it's one of the critical dependencies for my own package in CRAN. Having a full_join function would be good addition, and round out the...

Google Drive Authorization Fails

Same issue

`getTestProject`: Error in (function (classes, fdef, mtable) : unable to find an inherited method for function ‘replaceCOLS’ for signature ‘"DataFrame"’

I found a reproducible example of this error: https://nubes.helmholtz-berlin.de/s/wqg6tmX4fW7pci5 And updated packages do not solve the issues. After downloading the ArchR Projects from this publication, I found that I could...

Unconstrained integration error - "more elements supplied than there are to replace"

For those still hitting this issue, I've generated a branch of ArchR with this patch implemented (along with additional helpful functions) here: If you're not familiar, you can clone this...