Mark Derbyshire

icon indicating a website link http://oasisapps.curtin.edu.au/staff/profile/view/Mark.Derbyshire icon indicating an email [email protected]

icon company Curtin University icon location Perth, Australia icon location Project leader @ CCDM in Curtin University. Amateur coder keenly interested in bioinformatics, evolutionary biology and genome-assisted crop breeding.

Results 3 issues of Mark Derbyshire

Missing '--alt-prefix' option in recent versions of vg deconstruct.

**1. What were you trying to do?** Use the '--alt-prefix' option of vg deconstruct to produce a VCF with only calls between the reference and a subset of the samples....

Minor installation suggestion

2 comment

Dear developers, [errlog.txt](https://github.com/auton1/LDhat/files/13933940/errlog.txt) I am not sure if this program is still being maintained but it might be good to enforce `-std=c++11` in the make file, e.g. `CFLAGS = -O3...

Suggested bug fix for ready_for_MSA.sh

Great programs. Spent a while debugging panHiTE for some genomes and thought this might be helpful. My investigations started with an error in the pan_recover_low_copy_TEs process, which produced a traceback...