Malte Siemers

icon location Data analysis and visualization.

Results 5 comments of Malte Siemers

add RNASeqTools TSS tutorial

Thanks a lot already for the review. I will look into packaging the binary dependencies and fix the comments style consistently in the next days :)

add RNASeqTools TSS tutorial

Hi @kescobo Sorry for the long delay, I couldn't find the time to work on this. Today I managed to make an artifact for one of my dependencies, bwa-mem2: https://github.com/maltesie/bwamem2_jll.jl...

add RNASeqTools TSS tutorial

bwamem2_jll is now a registered binary package and I adjusted RNASeqTools to use it. But I cant get sra-tools to compile with BinaryBuilder. I will check how to use BioServices...

Update RNAseq tutorial

I made a draft for a new tutorial for RNAseq data. It uses reads from a TEX-treated sample in V. Cholerae and computes putative transcription start sites in it. It...

Update RNAseq tutorial

I created a PR, I think. Thanks for all the help :)